Asger Hobolth: search on Z-Library

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1

A Markov chain Monte Carlo Expectation Maximization Algorithm for Statistical Analysis of DNA Sequence Evolution with Neighbor-Dependent Substitution Rates

Journal:

Journal of Computational and Graphical Statistics

Year:

2008

Language:

english

File:

PDF, 1.24 MB

english, 2008

2

A Markov Chain Monte Carlo Expectation Maximization Algorithm for Statistical Analysis of DNA Sequence Evolution with Neighbor-Dependent Substitution Rates

Journal:

Journal of Computational and Graphical Statistics

Year:

2008

Language:

english

File:

PDF, 1.81 MB

english, 2008

3

Comparative analysis of protein coding sequences from human, mouse and the domesticated pig

Frank Grønlund Jørgensen, Asger Hobolth, Henrik Hornshøj, Christian Bendixen, Merete Fredholm, Heide Mikkel Schierup

Journal:

Year:

2005

Language:

english

File:

PDF, 665 KB

english, 2005

4

A continuous parametric shape model

Asger Hobolth, Jan Pedersen, Eva B. Vedel Jensen

Journal:

Annals of the Institute of Statistical Mathematics

Year:

2003

Language:

english

File:

PDF, 1.01 MB

english, 2003

5

On the Relation between Edge and Vertex Modelling in Shape Analysis

ASGER HOBOLTH, JOHN T. KENT, IAN L. DRYDEN

Journal:

Scandinavian Journal of Statistics

Year:

2002

Language:

english

File:

PDF, 270 KB

english, 2002

6

A Deformable Template Model, with Special Reference to Elliptical Templates

Asger Hobolth, Jan Pedersen, Eva B. Vedel Jensen

Journal:

Journal of Mathematical Imaging and Vision

Year:

2002

Language:

english

File:

PDF, 222 KB

english, 2002

7

Insights into hominid evolution from the gorilla genome sequence

Scally, Aylwyn, Dutheil, Julien Y., Hillier, LaDeana W., Jordan, Gregory E., Goodhead, Ian, Herrero, Javier, Hobolth, Asger, Lappalainen, Tuuli, Mailund, Thomas, Marques-Bonet, Tomas

Journal:

Year:

2012

Language:

english

File:

PDF, 488 KB

english, 2012

8

The genealogy, site frequency spectrum and ages of two nested mutant alleles

Asger Hobolth, Carsten Wiuf

Journal:

Theoretical Population Biology

Year:

2009

Language:

english

File:

PDF, 1.40 MB

english, 2009

9

Comparison of methods for calculating conditional expectations of sufficient statistics for continuous time Markov chains

Paula Tataru, Asger Hobolth

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 301 KB

english, 2011

10

Efficient computation in the IM model

Andersen, Lars NÃ¸rvang, Mailund, Thomas, Hobolth, Asger

Journal:

Journal of Mathematical Biology

Year:

2014

Language:

english

File:

PDF, 983 KB

english, 2014

11

Markovian approximation to the finite loci coalescent with recombination along multiple sequences

Hobolth, Asger, Jensen, Jens Ledet

Journal:

Theoretical Population Biology

Year:

2014

Language:

english

File:

PDF, 879 KB

english, 2014

12

A Note on Design-Based versus Model-Based Variance Estimation in Stereology

Asger Hobolth and Eva B. Vedel Jensen

Journal:

Advances in Applied Probability

Year:

2002

Language:

english

File:

PDF, 610 KB

english, 2002

13

Modelling Stochastic Changes in Curve Shape, with an Application to Cancer Diagnostics

Asger Hobolth and Eva B. Vedel Jensen

Journal:

Advances in Applied Probability

Year:

2000

Language:

english

File:

PDF, 1.50 MB

english, 2000

14

Pseudo-Likelihood Analysis of Codon Substitution Models with Neighbor-Dependent Rates

Christensen, Ole F., Hobolth, Asger, Jensen, Jens L.

Journal:

Journal of Computational Biology

Year:

2005

Language:

english

File:

PDF, 165 KB

english, 2005

15

Applications of Hidden Markov Models for Characterization of Homologous DNA Sequences with a Common Gene

Hobolth, Asger, Jensen, Jens Ledet

Journal:

Journal of Computational Biology

Year:

2005

Language:

english

File:

PDF, 338 KB

english, 2005

16

Statistical Inference in Evolutionary Models of DNA Sequences via the EM Algorithm

Hobolth, Asger, Jensen, Jens Ledet

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 281 KB

english, 2005

17

Importance Sampling for the Infinite Sites Model

Hobolth, Asger, Uyenoyama, Marcy K, Wiuf, Carsten

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2008

Language:

english

File:

PDF, 567 KB

english, 2008

18

Extreme selective sweeps independently targeted the X chromosomes of the great apes

Nam, Kiwoong, Munch, Kasper, Hobolth, Asger, Dutheil, Julien Yann, Veeramah, Krishna R., Woerner, August E., Hammer, Michael F., Mailund, Thomas, Schierup, Mikkel Heide

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 1.61 MB

english, 2015

19

Genomic Relationships and Speciation Times of Human, Chimpanzee, and Gorilla Inferred from a Coalescent Hidden Markov Model

Hobolth, Asger, Christensen, Ole F., Mailund, Thomas, Schierup, Mikkel H.

Journal:

Year:

2007

Language:

english

File:

PDF, 560 KB

english, 2007

20

A New Isolation with Migration Model along Complete Genomes Infers Very Different Divergence Processes among Closely Related Great Ape Species

Mailund, Thomas, Halager, Anders E., Westergaard, Michael, Dutheil, Julien Y., Munch, Kasper, Andersen, Lars N., Lunter, Gerton, Prüfer, Kay, Scally, Aylwyn, Hobolth, Asger, Schierup, Mikkel H., Malik

Journal:

Year:

2012

Language:

english

File:

PDF, 1.63 MB

english, 2012

21

Simulation from Endpoint-Conditioned, Continuous-Time Markov Chains on a Finite State Space, with Applications to Molecular Evolution

Asger Hobolth and Eric A. Stone

Journal:

The Annals of Applied Statistics

Year:

2009

Language:

english

File:

PDF, 2.27 MB

english, 2009

22

SUMMARY STATISTICS FOR ENDPOINT-CONDITIONED CONTINUOUS-TIME MARKOV CHAINS

ASGER HOBOLTH and JENS LEDET JENSEN

Journal:

Journal of Applied Probability

Year:

2011

Language:

english

File:

PDF, 956 KB

english, 2011

23

The multivariate Wright–Fisher process with mutation: Moment-based analysis and inference using a hierarchical Beta model

Hobolth, Asger, Siren, Jukka

Journal:

Theoretical Population Biology

Year:

2016

Language:

english

File:

PDF, 1.27 MB

english, 2016

24

The importance of distinguishing between the odds ratio and the incidence rate ratio in GWAS

Waltoft, Berit Lindum, Pedersen, Carsten Bøcker, Nyegaard, Mette, Hobolth, Asger

Journal:

BMC Medical Genetics

Year:

2015

Language:

english

File:

PDF, 1.16 MB

english, 2015

25

On the Relation between Edge and Vertex Modelling in Shape Analysis

Asger Hobolth, John T. Kent and Ian L. Dryden

Journal:

Scandinavian Journal of Statistics

Year:

2002

Language:

english

File:

PDF, 1.83 MB

english, 2002

26

An alternative derivation of the stationary distribution of the multivariate neutral Wright–Fisher model for low mutation rates with a view to mutation rate estimation from site frequency data

Schrempf, Dominik, Hobolth, Asger

Journal:

Theoretical Population Biology

Year:

2017

Language:

english

File:

PDF, 563 KB

english, 2017

27

Simulation from endpoint-conditioned, continuous-time Markov chains on a finite state space, with applications to molecular evolution

Hobolth, Asger, Stone, Eric A.

Journal:

The Annals of Applied Statistics

Year:

2009

Language:

english

File:

PDF, 1.01 MB

english, 2009

28

Statistical Inference in the Wright–Fisher Model Using Allele Frequency Data

Tataru, Paula, Simonsen, Maria, Bataillon, Thomas, Hobolth, Asger

Journal:

Systematic Biology

Year:

2016

Language:

english

File:

PDF, 1.27 MB

english, 2016

29

A note on design-based versus model-based variance estimation in stereology

Hobolth, Asger, Jensen, Eva B. Vedel

Journal:

Advances in Applied Probability

Year:

2002

Language:

english

File:

PDF, 97 KB

english, 2002

30

Pan-cancer screen for mutations in non-coding elements with conservation and cancer specificity reveals correlations with expression and survival

Hornshøj, Henrik, Nielsen, Morten Muhlig, Sinnott-Armstrong, Nicholas A., Świtnicki, Michał P., Juul, Malene, Madsen, Tobias, Sallari, Richard, Kellis, Manolis, Ørntoft, Torben, Hobolth, Asger, Peders

Journal:

npj Genomic Medicine

Year:

2018

Language:

english

File:

PDF, 2.45 MB

english, 2018

31

Modelling stochastic changes in curve shape, with an application to cancer diagnostics

Hobolth, Asger, Vedel Jensen, Eva B.

Journal:

Advances in Applied Probability

Year:

2000

Language:

english

File:

PDF, 407 KB

english, 2000

32

Summary Statistics for Endpoint-Conditioned Continuous-Time Markov Chains

Hobolth, Asger, Jensen, Jens Ledet

Journal:

Journal of Applied Probability

Year:

2011

Language:

english

File:

PDF, 150 KB

english, 2011

33

A site specific model and analysis of the neutral somatic mutation rate in whole-genome cancer data

Bertl, Johanna, Guo, Qianyun, Juul, Malene, Besenbacher, Søren, Nielsen, Morten Muhlig, Hornshøj, Henrik, Pedersen, Jakob Skou, Hobolth, Asger

Journal:

BMC Bioinformatics

Year:

2018

Language:

english

File:

PDF, 2.18 MB

english, 2018

34

ncdDetect2: Improved models of the site-specific mutation rate in cancer and driver detection with robust significance evaluation

Juul, Malene, Madsen, Tobias, Guo, Qianyun, Bertl, Johanna, Hobolth, Asger, Kellis, Manolis, Pedersen, Jakob Skou, Hancock, John

Journal:

Year:

2018

Language:

english

File:

PDF, 4.41 MB

english, 2018

35

Algorithms for Hidden Markov Models Restricted to Occurrences of Regular Expressions

Tataru, Paula, Sand, Andreas, Hobolth, Asger, Mailund, Thomas, Pedersen, Christian

Journal:

Year:

2013

Language:

english

File:

PDF, 344 KB

english, 2013

36

Non-coding cancer driver candidates identified with a sample- and position-specific model of the somatic mutation rate

Juul, Malene, Bertl, Johanna, Guo, Qianyun, Nielsen, Morten Muhlig, Świtnicki, Michał, Hornshøj, Henrik, Madsen, Tobias, Hobolth, Asger, Pedersen, Jakob Skou

Journal:

Year:

2017

Language:

english

File:

PDF, 5.88 MB

english, 2017

37

Detecting archaic introgression using an unadmixed outgroup

Skov, Laurits, Hui, Ruoyun, Shchur, Vladimir, Hobolth, Asger, Scally, Aylwyn, Schierup, Mikkel Heide, Durbin, Richard, Racimo, Fernando

Journal:

Year:

2018

Language:

english

File:

PDF, 6.02 MB

english, 2018

38

Regmex: a statistical tool for exploring motifs in ranked sequence lists from genomics experiments

Nielsen, Morten Muhlig, Tataru, Paula, Madsen, Tobias, Hobolth, Asger, Pedersen, Jakob Skou

Journal:

Algorithms for Molecular Biology

Year:

2018

Language:

english

File:

PDF, 1.61 MB

english, 2018

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